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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64396459_64396595_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64396459 - 64396595
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTGTCATTGAGA
Flanking Amino Acid:
NMTREVYTSLAQHLEFYFLS
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.8
31.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
82
0.72
0.8
80.7
31.3
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
56.8
0.21
2
71.47
40.8

Associated Gene:

Gene:
TBC1D32
Ensembl Gene ID:
ENSAPLG00000014789
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015454
64388160 - 64465556
77397