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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64399922_64400192_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64399922 - 64400192
Intron Length:
271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTTATTGTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTGGTTTTATT
Flanking Amino Acid:
RVNDFSQQYSSDKQKFSYTG
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
0.9
76.8
31.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
81.5
0.71
0.9
77.3
36.8
Minor 5ss
36.7
-1.5
2.9
47.4
36.1
Minor BPS
49.3
0.03
2.1
74.98
42.6

Associated Gene:

Gene:
TBC1D32
Ensembl Gene ID:
ENSAPLG00000014789
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015454
64388160 - 64465556
77397