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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64412684_64414261_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
64412684 - 64414261
Intron Length:
1578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
GCTACTCCTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TATATATTAAAT
Flanking Amino Acid:
TSSISLESKNVLLWEETLLD
Intron Amino Acid Position:
676

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
78.2
36.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
73.3
0.52
0.9
65.2
36.2
Minor 5ss
40.6
-1
3.4
59
45.5
Minor BPS
57.8
0.32
1.7
76.64
38.9

Associated Gene:

Gene:
TBC1D32
Ensembl Gene ID:
ENSAPLG00000014789
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015454
64388160 - 64465556
77397