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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64419452_64431032_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
64419452 - 64431032
Intron Length:
11581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
ATGTGTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
ATCACTTCAATG
Flanking Amino Acid:
SYEQSHIFGLRLLNVLCCEL
Intron Amino Acid Position:
860

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
73.9
0.54
0.9
66.8
40
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
50.2
-0.1
1.6
54.46
41.2

Associated Gene:

Gene:
TBC1D32
Ensembl Gene ID:
ENSAPLG00000014789
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015454
64388160 - 64465556
77397