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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64432998_64433801_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64432998 - 64433801
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGAATT
5'SS Class:
strong_major
3'SS Sequence:
GTCCTGTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CCTAATTTAATT
Flanking Amino Acid:
RILPQRVLDKGSDPYPWPMF
Intron Amino Acid Position:
938

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
85.7
30.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.6
0.53
0.9
65
41.2
Minor 5ss
35.8
-1.6
3
49.8
46.1
Minor BPS
56.8
0.29
1.6
68.97
42.6

Associated Gene:

Gene:
TBC1D32
Ensembl Gene ID:
ENSAPLG00000014789
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015454
64388160 - 64465556
77397