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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64449815_64457269_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64449815 - 64457269
Intron Length:
7455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATAATA
Flanking Amino Acid:
DCYFSMESYKAMDADVKKER
Intron Amino Acid Position:
1039

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1.2
82.3
32.2
Major BPS
100
1.24
0.5
100
0
Major PPT
85.1
0.79
0.8
84.6
30.4
Minor 5ss
40.2
-1.1
2.8
53
44.1
Minor BPS
72.8
0.71
1.5
83.87
29.7

Associated Gene:

Gene:
TBC1D32
Ensembl Gene ID:
ENSAPLG00000014789
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015454
64388160 - 64465556
77397