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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64461229_64462418_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64461229 - 64462418
Intron Length:
1190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGAT
5'SS Class:
major
3'SS Sequence:
TATTCTCACCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTATTCTCACCT
Flanking Amino Acid:
FHMAGFAPSQICLQWITQCF
Intron Amino Acid Position:
1200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.2
72.5
39.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
70.2
0.45
0.9
63.3
38.2
Minor 5ss
38.8
-1.3
3.5
57.9
46.7
Minor BPS
60.2
0.4
1.8
80.74
41

Associated Gene:

Gene:
TBC1D32
Ensembl Gene ID:
ENSAPLG00000014789
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015454
64388160 - 64465556
77397