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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64462608_64465436_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64462608 - 64465436
Intron Length:
2829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTATCTAATA
Flanking Amino Acid:
EAQDLQVFLKEEALHGFRVS
Intron Amino Acid Position:
1263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
79.7
33.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
77.8
0.63
1
73
42
Minor 5ss
36.9
-1.5
3.8
55.6
43.2
Minor BPS
54.2
0.13
1.8
68.63
38.1

Associated Gene:

Gene:
TBC1D32
Ensembl Gene ID:
ENSAPLG00000014789
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015454
64388160 - 64465556
77397