Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64485739_64520667_F

Intron Information:

Intron Rank:

148775

Intron Class:

major

Intron Phase:

Intron Coordinates:

64485739 - 64520667

Intron Length:

34929

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTAAGAAAG

5'SS Class:

major

3'SS Sequence:

TTTTCTTCCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTTAC

U12 Branch Point Sequence:

ATTTACTTGATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.6

0.51

1.1

66.4

38.9

Major BPS

78.8

0.71

0.9

69.7

37.1

Major PPT

88.2

0.86

0.6

84.1

24.1

Minor 5ss

35.4

-1.7

46.5

42.8

Minor BPS

69.2

0.59

1.4

77.04

32.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030088

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023435

64485732 - 64522000

36269