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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64518871_64519587_R

Intron Information:

Intron Rank:
151640
Intron Class:
major
Intron Phase:
Intron Coordinates:
64518871 - 64519587
Intron Length:
717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCAGA
5'SS Class:
major
3'SS Sequence:
TTTCTGTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATTTTTAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
43.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.8
0.78
0.8
80.1
32
Minor 5ss
37.4
-1.4
3.1
48.6
47.2
Minor BPS
60
0.39
1.6
74.5
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029142
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029228
64518322 - 64521800
3479