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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64520859_64521656_R

Intron Information:

Intron Rank:
151642
Intron Class:
major
Intron Phase:
Intron Coordinates:
64520859 - 64521656
Intron Length:
798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGGATT
5'SS Class:
major
3'SS Sequence:
TTCTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGCATTTTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.3
82.5
37
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.7
0.87
0.7
81
31
Minor 5ss
33.6
-1.9
3.3
48.8
47
Minor BPS
45.7
-0.2
1.9
60.18
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029142
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039473
64518322 - 64521800
3479
ENSAPLT00000029228
64518322 - 64521800
3479