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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64610506_64620102_F

Intron Information:

Intron Rank:
148103
Intron Class:
major
Intron Phase:
Intron Coordinates:
64610506 - 64620102
Intron Length:
9597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TAAATCTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
ATCTTATGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
71.6
40.1
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
73.4
0.53
0.9
70.5
40.5
Minor 5ss
35.3
-1.7
2.9
41.6
39
Minor BPS
49.3
0.03
1.8
69.63
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029739
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042698
64610155 - 64620278
10124
ENSAPLT00000041759
64608732 - 64620278
11547