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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64840755_64842680_R

Intron Information:

Intron Rank:
144890
Intron Class:
major
Intron Phase:
Intron Coordinates:
64840755 - 64842680
Intron Length:
1926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTGTC
5'SS Class:
major
3'SS Sequence:
TTATTTCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
74.3
34.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74
0.54
1
70.9
38.7
Minor 5ss
45.8
-0.4
3.1
65.2
39.7
Minor BPS
71.8
0.76
1.5
85.98
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025339
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031791
64835909 - 64843502
7594