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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64943714_64944291_R

Intron Information:

Intron Rank:
131293
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
64943714 - 64944291
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTAACTGAACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
85.1
25.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
55.4
0.12
1.1
48.8
43.8
Minor 5ss
34.4
-1.8
2.9
46.9
41.8
Minor BPS
80.5
1.04
1.4
95.09
30.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017849
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047007
64943361 - 64958888
15528