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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64944383_64947717_R

Intron Information:

Intron Rank:
131294
Intron Class:
major
Intron Phase:
Intron Coordinates:
64944383 - 64947717
Intron Length:
3335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTAGTG
5'SS Class:
major
3'SS Sequence:
CCATGATTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
CTTTCCATGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
62.7
42.1
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
72.7
0.51
1
65.3
39.9
Minor 5ss
32.7
-2
3.7
46.7
48.7
Minor BPS
67.7
0.64
1.6
84.01
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017849
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047007
64943361 - 64958888
15528