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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64948222_64958478_R

Intron Information:

Intron Rank:
131296
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
64948222 - 64958478
Intron Length:
10257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGCCAGC
5'SS Class:
weak_major
3'SS Sequence:
ATGCATTTTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATGCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.6
0.02
1.5
49.6
43.7
Major BPS
100
1.24
0.5
100
0
Major PPT
71.9
0.49
0.9
65.5
40.2
Minor 5ss
39.3
-1.2
3
52.6
44.2
Minor BPS
52.9
0.17
2.2
82.16
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017849
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047007
64943361 - 64958888
15528