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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65027514_65034267_R

Intron Information:

Intron Rank:
132777
Intron Class:
major
Intron Phase:
Intron Coordinates:
65027514 - 65034267
Intron Length:
6754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACACCA
5'SS Class:
major
3'SS Sequence:
ACATTTTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATTTATTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.2
65.3
40.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
78.8
0.65
0.9
76.9
36.4
Minor 5ss
37.8
-1.4
3.1
49.4
46.3
Minor BPS
54.2
0.21
1.9
76.56
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018665
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041292
65012952 - 65034624
21673