About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65196188_65224032_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
65196188 - 65224032
Intron Length:
27845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTGGGCATT
5'SS Class:
weak_major
3'SS Sequence:
TACCCCTGCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TCTCCCCTACCC
Flanking Amino Acid:
LPAFNTPTGIPGIGRNWPWA
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.9
0.07
1.3
60
46.2
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
61.5
0.26
0.9
53.9
36.2
Minor 5ss
40.3
-1.1
3.4
61.2
43.8
Minor BPS
52.6
0.06
2
68.8
42.6

Associated Gene:

Gene:
MAN1A1
Ensembl Gene ID:
ENSAPLG00000015044
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029511
65154020 - 65243451
89432
ENSAPLT00000021029
65145370 - 65243451
98082
ENSAPLT00000015692
65145370 - 65248361
102992
ENSAPLT00000040860
65167047 - 65248361
81315