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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65225667_65229820_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65225667 - 65229820
Intron Length:
4154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
ATTCCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ACTTCTTTATTC
Flanking Amino Acid:
LNPSSGQWGQHHVSIGGLGD
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
78
38.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
83
0.74
0.7
81.5
29.7
Minor 5ss
36.5
-1.5
2.7
41.6
38.2
Minor BPS
62.4
0.37
1.6
68
38.4

Associated Gene:

Gene:
MAN1A1
Ensembl Gene ID:
ENSAPLG00000015044
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029511
65154020 - 65243451
89432
ENSAPLT00000021029
65145370 - 65243451
98082
ENSAPLT00000015692
65145370 - 65248361
102992
ENSAPLT00000040860
65167047 - 65248361
81315