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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65229937_65241043_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65229937 - 65241043
Intron Length:
11107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGAG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TTTTGGTTAAAA
Flanking Amino Acid:
GKKMYYDAVQAIETHLIRKS
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
74.7
35.6
Major BPS
71.6
0.54
1
72
33.1
Major PPT
83.2
0.75
0.8
77.6
31.2
Minor 5ss
31.4
-2.1
3.2
39.6
46.4
Minor BPS
53
0.09
2.5
76.43
40.8

Associated Gene:

Gene:
MAN1A1
Ensembl Gene ID:
ENSAPLG00000015044
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029511
65154020 - 65243451
89432
ENSAPLT00000021029
65145370 - 65243451
98082
ENSAPLT00000015692
65145370 - 65248361
102992
ENSAPLT00000040860
65167047 - 65248361
81315