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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65291271_65291708_F

Intron Information:

Intron Rank:
150024
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
65291271 - 65291708
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTATGTTTG
5'SS Class:
weak_major
3'SS Sequence:
TGTGCATTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAA
U12 Branch Point Sequence:
CCCATCTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.1
64.8
41.7
Major BPS
73.4
0.58
0.9
63.7
35.1
Major PPT
72.1
0.5
0.9
62.8
43.3
Minor 5ss
59.9
0.33
2.3
76.2
39.3
Minor BPS
65.4
0.56
1.4
71.55
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030675
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031408
65285492 - 65297434
11943