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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65336275_65338732_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65336275 - 65338732
Intron Length:
2458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTATGTATG
5'SS Class:
major
3'SS Sequence:
ATGTTGTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAGGTTTTAAAG
Flanking Amino Acid:
QQATDLVLKASHIGMLQATQ
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
68.5
42.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.6
0.55
0.9
66.3
44.6
Minor 5ss
47.6
-0.2
2.5
65.2
40
Minor BPS
48.2
-0.2
1.5
47.27
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026286
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044906
65333055 - 65344962
11908