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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65338915_65339572_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65338915 - 65339572
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGACTT
5'SS Class:
major
3'SS Sequence:
TCATCTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCTCTTCATCT
Flanking Amino Acid:
QRQQILALEKKVNEARETQR
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1.1
76.6
38.6
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
81
0.7
0.8
76.9
31.4
Minor 5ss
34.3
-1.8
3.2
48.7
46.9
Minor BPS
60
0.39
1.8
79.81
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026286
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044906
65333055 - 65344962
11908