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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65344074_65344863_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
65344074 - 65344863
Intron Length:
790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGCATTAG
5'SS Class:
weak_major
3'SS Sequence:
GCAACTATCTTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
VNLIVSANSPPKDKEDSSLI
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.9
0.02
1.1
48.7
38.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
58.9
0.2
0.9
55
39.7
Minor 5ss
35.3
-1.7
3.2
48.6
47.6
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026286
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044906
65333055 - 65344962
11908