Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65374258_65374741_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

65374258 - 65374741

Intron Length:

484

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGAATT

5'SS Class:

strong_major

3'SS Sequence:

ATAAATTAAACAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

CTTTTTTTAACA

Flanking Amino Acid:

RIRSESNQQIRMHEQDLSKK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.8

86.3

Major BPS

87.3

0.93

0.8

36.5

Major PPT

0.18

1.1

52.1

45.2

Minor 5ss

45.5

-0.5

2.9

66.2

44.9

Minor BPS

79.3

0.92

1.1

82.25

33.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021038

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030955

65365291 - 65382251

16961