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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65377326_65378049_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65377326 - 65378049
Intron Length:
724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGACTT
5'SS Class:
major
3'SS Sequence:
TTCTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
AATGCATAAAAA
Flanking Amino Acid:
ERDQLIKKLIEDKKFYQLEL
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
70.2
39.9
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
89
0.88
0.6
88.7
20.7
Minor 5ss
40.5
-1.1
3.4
63.5
41.8
Minor BPS
45.5
-0.3
2
57.62
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021038
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030955
65365291 - 65382251
16961