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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65388544_65388666_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
65388544 - 65388666
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCCGCTG
5'SS Class:
major
3'SS Sequence:
TTCTGACGCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.9
0.26
1.2
51.5
46.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
68.7
0.42
1
66
39.9
Minor 5ss
33.4
-1.9
3.6
46.8
48.5
Minor BPS
73.7
0.82
1.3
85.63
34

Associated Gene:

Gene:
MCM9
Ensembl Gene ID:
ENSAPLG00000015174
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015829
65388320 - 65435052
46733