Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65395946_65397929_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

65395946 - 65397929

Intron Length:

1984

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

GCTCCTCTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTTAG

U12 Branch Point Sequence:

CAGTGCTGAGTG

Flanking Amino Acid:

WEKHRNDPLAGRNEILASLC

Intron Amino Acid Position:

304

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

1.1

77.3

37.8

Major BPS

55.1

0.13

1.5

42.7

Major PPT

74.3

0.55

0.8

65.6

Minor 5ss

32.4

-2

2.5

39.5

Minor BPS

41.2

-0.8

40.98

43.7

Associated Gene:

Gene:

MCM9

Ensembl Gene ID:

ENSAPLG00000015174

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038403

65388320 - 65435207

46888

ENSAPLT00000015829

65388320 - 65435052

46733