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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65411402_65415487_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65411402 - 65415487
Intron Length:
4086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCACCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CATAATTTATCT
Flanking Amino Acid:
PAGRHMFVFQLQRNILASNP
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.3
32.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
74.1
0.54
0.8
66.3
34.7
Minor 5ss
48.4
-0.1
2.8
67.4
44
Minor BPS
49
0
1.8
66.74
43.7

Associated Gene:

Gene:
ASF1A
Ensembl Gene ID:
ENSAPLG00000027204
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042391
65411189 - 65417105
5917