Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65424284_65425228_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

65424284 - 65425228

Intron Length:

945

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGAGTT

5'SS Class:

strong_major

3'SS Sequence:

AGTTGTTGCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAA

U12 Branch Point Sequence:

TTGTTATAAAAT

Flanking Amino Acid:

IISSFILQNKGCPSKSEKLW

Intron Amino Acid Position:

512

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.83

0.9

80.7

31.7

Major BPS

78.6

0.71

78.6

Major PPT

67.4

0.39

1.1

61.6

43.9

Minor 5ss

42.5

-0.8

3.5

64.3

47.2

Minor BPS

49.8

0.06

73.83

42.9

Associated Gene:

Gene:

MCM9

Ensembl Gene ID:

ENSAPLG00000015174

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038403

65388320 - 65435207

46888

ENSAPLT00000015829

65388320 - 65435052

46733