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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65530033_65558293_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65530033 - 65558293
Intron Length:
28261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTGTATTGTACT
Flanking Amino Acid:
IGTSCSDSVEDHSTSSGTSS
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
80.2
30.7
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
84.1
0.77
0.7
77
31.7
Minor 5ss
34.1
-1.8
2.8
40.8
45.4
Minor BPS
49.1
0.02
2
73.6
43

Associated Gene:

Gene:
CEP85L
Ensembl Gene ID:
ENSAPLG00000015522
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035538
65513615 - 65620977
107363
ENSAPLT00000016184
65480804 - 65620535
139732