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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6557727_6560572_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6557727 - 6560572
Intron Length:
2846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTTTCTCTATA
Flanking Amino Acid:
QETEETITYTQCTDGYEWDP
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
73.8
42.7
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
88.9
0.88
0.6
85
22.7
Minor 5ss
37.2
-1.5
3.6
57.4
46.8
Minor BPS
58.2
0.25
1.8
74.89
36.5

Associated Gene:

Gene:
EFEMP1
Ensembl Gene ID:
ENSAPLG00000001442
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001836
6556824 - 6605540
48717