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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6560622_6560794_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6560622 - 6560794
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
TTGCTAACCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TTGTTGCTAACC
Flanking Amino Acid:
EWDPVRQRCKDIDECEIVPD
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
69.5
0.44
0.9
62.8
37.4
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
49.7
-0
2.3
70.32
41.3

Associated Gene:

Gene:
EFEMP1
Ensembl Gene ID:
ENSAPLG00000001442
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001836
6556824 - 6605540
48717