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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6561056_6593229_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6561056 - 6593229
Intron Length:
32174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTATAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AGTTCTATGACT
Flanking Amino Acid:
YEQSEHNVCQDIDECATGTH
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.3
0.59
1
78.7
32.7
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
62.9
0.49
1.6
79.32
36.3

Associated Gene:

Gene:
EFEMP1
Ensembl Gene ID:
ENSAPLG00000001442
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001836
6556824 - 6605540
48717