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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65613180_65613508_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65613180 - 65613508
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATATTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATTATTCAATT
Flanking Amino Acid:
LREKNEKASKVIDNQQKQIA
Intron Amino Acid Position:
597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.1
73.9
42.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.2
0.72
0.8
74.9
39.5
Minor 5ss
34.2
-1.8
2.8
41.7
44.8
Minor BPS
55.8
0.26
1.7
73.02
37.8

Associated Gene:

Gene:
CEP85L
Ensembl Gene ID:
ENSAPLG00000015522
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035538
65513615 - 65620977
107363
ENSAPLT00000016184
65480804 - 65620535
139732