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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65665951_65666589_F

Intron Information:

Intron Rank:
150379
Intron Class:
major
Intron Phase:
Intron Coordinates:
65665951 - 65666589
Intron Length:
639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTAAA
5'SS Class:
major
3'SS Sequence:
ATCTTGATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TCCATCTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
77.8
31.4
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
77.8
0.63
0.9
74.2
39.7
Minor 5ss
41.2
-1
2.5
51
45.5
Minor BPS
61.1
0.43
1.3
70.61
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030821
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034542
65665802 - 65669643
3842