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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65701089_65706358_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65701089 - 65706358
Intron Length:
5270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATCAC
U12 Branch Point Sequence:
TTCTCTTCCACA
Flanking Amino Acid:
LLKVPWDWQIGLLYVGFSAC
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
54.4
0.11
1.2
57.5
39.1
Major PPT
84.1
0.77
0.7
79.7
25.9
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
54.8
0.14
2
71.01
41.7

Associated Gene:

Gene:
SLC35F1
Ensembl Gene ID:
ENSAPLG00000015578
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036828
65677657 - 65918901
241245
ENSAPLT00000027719
65677657 - 65918901
241245
ENSAPLT00000016233
65677657 - 65881237
203581