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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65706412_65711454_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65706412 - 65711454
Intron Length:
5043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTGAG
5'SS Class:
major
3'SS Sequence:
TCTTCTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
CTTCCATCAATT
Flanking Amino Acid:
LFGSFFSGIQLAIMEHKELL
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
65.6
40.2
Major BPS
65
0.37
1.3
76.1
38
Major PPT
89.2
0.88
0.6
83.8
24.5
Minor 5ss
34.9
-1.7
3.3
50
46.2
Minor BPS
54.7
0.22
1.8
75.15
41.5

Associated Gene:

Gene:
SLC35F1
Ensembl Gene ID:
ENSAPLG00000015578
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036828
65677657 - 65918901
241245
ENSAPLT00000027719
65677657 - 65918901
241245
ENSAPLT00000016233
65677657 - 65881237
203581