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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65711612_65716501_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65711612 - 65716501
Intron Length:
4890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTCCCCATGT
Flanking Amino Acid:
DVLVGRQQGAGENKLIGDLL
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.7
92.2
16.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
81.8
0.72
0.8
74.4
40.4
Minor 5ss
32
-2.1
2.8
41.5
45.1
Minor BPS
47.2
-0.1
2.3
77.09
45

Associated Gene:

Gene:
SLC35F1
Ensembl Gene ID:
ENSAPLG00000015578
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036828
65677657 - 65918901
241245
ENSAPLT00000027719
65677657 - 65918901
241245
ENSAPLT00000016233
65677657 - 65881237
203581