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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65728889_65783052_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65728889 - 65783052
Intron Length:
54164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAACCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTAACC
Flanking Amino Acid:
VYTTTLAVRQGEENLLAILK
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
34.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.1
0.68
0.8
74.5
34
Minor 5ss
40.9
-1
3.4
58.3
46.6
Minor BPS
85.8
1.1
0.9
89.58
24.4

Associated Gene:

Gene:
SLC35F1
Ensembl Gene ID:
ENSAPLG00000015578
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036828
65677657 - 65918901
241245
ENSAPLT00000027719
65677657 - 65918901
241245
ENSAPLT00000016233
65677657 - 65881237
203581