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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65783229_65881178_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65783229 - 65881178
Intron Length:
97950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TCATTCCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATTC
Flanking Amino Acid:
FHQIQENSNRRDLLLSVALG
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.7
0.67
0.8
77.9
30.7
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
59.2
0.27
1.8
74
37.3

Associated Gene:

Gene:
SLC35F1
Ensembl Gene ID:
ENSAPLG00000015578
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016233
65677657 - 65881237
203581