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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65783229_65918698_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65783229 - 65918698
Intron Length:
135470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCGA
5'SS Class:
strong_major
3'SS Sequence:
TCATTCCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATTC
Flanking Amino Acid:
VRQRIRKVLNRDLLLSVALG
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.7
41.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.7
0.67
0.8
77.9
30.7
Minor 5ss
24.7
-2.9
3
29.8
43.1
Minor BPS
59.2
0.27
1.8
74
37.3

Associated Gene:

Gene:
SLC35F1
Ensembl Gene ID:
ENSAPLG00000015578
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036828
65677657 - 65918901
241245
ENSAPLT00000027719
65677657 - 65918901
241245