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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65954620_65955471_F

Intron Information:

Intron Rank:
125892
Intron Class:
major
Intron Phase:
Intron Coordinates:
65954620 - 65955471
Intron Length:
852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTGGT
5'SS Class:
major
3'SS Sequence:
CTCTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CCAGCACTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
69.2
41.7
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
84.4
0.77
0.8
79.6
32.4
Minor 5ss
33.4
-1.9
3.5
50.3
45.9
Minor BPS
42.7
-0.5
2
48.78
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017817
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039402
65953793 - 65957048
3256