About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65955084_65955471_F

Intron Information:

Intron Rank:
125891
Intron Class:
major
Intron Phase:
Intron Coordinates:
65955084 - 65955471
Intron Length:
388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATGAT
5'SS Class:
major
3'SS Sequence:
CTCTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CCAGCACTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
74.7
35.6
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
84.4
0.77
0.8
79.6
32.4
Minor 5ss
33.3
-1.9
3.4
40.2
46
Minor BPS
42.7
-0.5
2
48.78
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017817
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024630
65954486 - 65957048
2563