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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65971044_65971780_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65971044 - 65971780
Intron Length:
737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTTGC
5'SS Class:
major
3'SS Sequence:
CTTGCTTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTTATTTTAACT
Flanking Amino Acid:
LPWHIRLTEIISLPSHQNIS
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
71.3
35.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
82
0.72
0.8
80.1
31.9
Minor 5ss
37.5
-1.4
2.9
48.1
41.3
Minor BPS
73.2
0.81
1.2
83.78
37.4

Associated Gene:

Gene:
NUS1
Ensembl Gene ID:
ENSAPLG00000015621
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016283
65970813 - 65986965
16153