About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65976259_65978581_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65976259 - 65978581
Intron Length:
2323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTACTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGCTTTTAAAC
Flanking Amino Acid:
EFANQEKADQVLNCQSTLKV
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.9
75.7
36.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.1
0.79
0.8
82.1
34.6
Minor 5ss
36.1
-1.6
3.3
47.1
48.3
Minor BPS
62
0.36
1.4
68.43
37

Associated Gene:

Gene:
NUS1
Ensembl Gene ID:
ENSAPLG00000015621
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016283
65970813 - 65986965
16153