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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65978705_65986831_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65978705 - 65986831
Intron Length:
8127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTAAAG
Flanking Amino Acid:
ISYVSVYDHNGIFKRNNSRL
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
80.5
29.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81
0.7
1
82.5
32.7
Minor 5ss
36.9
-1.5
3
49.9
46.4
Minor BPS
68.2
0.43
1.4
70.46
36.6

Associated Gene:

Gene:
NUS1
Ensembl Gene ID:
ENSAPLG00000015621
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016283
65970813 - 65986965
16153