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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_65992797_65995630_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65992797 - 65995630
Intron Length:
2834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTC
Flanking Amino Acid:
EQNLLISIPLRLPDTLARLD
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.4
0.82
0.8
85.6
33.6
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
61.5
0.34
1.5
70.16
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000593
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000578
65991997 - 66001675
9679