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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6599619_6600878_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6599619 - 6600878
Intron Length:
1260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
ACCAGCTTAAGT
Flanking Amino Acid:
ELSSDRINCEDTDECRTSSY
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
86
0.81
0.7
80.8
24.4
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
47.7
-0
2.1
62.4
47.5

Associated Gene:

Gene:
EFEMP1
Ensembl Gene ID:
ENSAPLG00000001442
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001836
6556824 - 6605540
48717