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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66026729_66028515_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66026729 - 66028515
Intron Length:
1787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTACGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TGTTGTTTATTC
Flanking Amino Acid:
AKYLDKELAGRVQQIQLLGR
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
85
26.2
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
70.3
0.46
0.9
66.2
39.9
Minor 5ss
41.1
-1
2.5
50.4
46.1
Minor BPS
51.4
0.02
2
66.4
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000612
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000696
66023927 - 66032580
8654